BtaEX6072202 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54160149-54163254:-
Coord C1 exon
chr17:54163129-54163254
Coord A exon
chr17:54161423-54161595
Coord C2 exon
chr17:54160149-54160300
Length
173 bp
Sequences
Splice sites
3' ss Seq
AAACATTGTCTCCCCCACAGACT
3' ss Score
8.64
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTCAAACAAAAATATTTGGAACTGGGTAGGATGATGAAAGACTATGAAGATAGAAAGTATGAGCAGTGGAGAGAGACGACGGAACAGATCCTGCCAACTCTCATGAAGAAGAGTCTGCTTACTAAG
Seq A exon
ACTTCTGCCGCTGGTGATGATGCCACAAACCCTGACAGAGTGGCTGCTTTCTCAATCAACTTTTCACCTGCTCTCAGGGAGATTATTAATGAAACAAAGTACTTGGAACAGCTAGGTTTCCCTGTCCCCGAATTAGCAAGGAACATTGCTCTCCAGGAGGACAAATTTCTTAG
Seq C2 exon
GTACACAGATGGGATACAACGTATGTTGGATCATTATCACATGCTCACAGGAACGTTAAATGAGGCAGAGTCTCTTCTTCTTGATGACCATTCCCAGGAATTATTAAGAGTGTTTAGATCTGGATACAAGAGGTTGAACTGGAACTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(18.1=100)
A:
PF083857=DHC_N1=FE(25.2=100)
C2:
PF083857=DHC_N1=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACTGGGTAGGATGATGA
R:
TGAGTTCCAGTTCAACCTCTTGT
Band lengths:
258-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]