HsaEX6069974 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123799246-123801432:+
Coord C1 exon
chr12:123799246-123799371
Coord A exon
chr12:123800216-123800388
Coord C2 exon
chr12:123801281-123801432
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATGGAATGTCTCTTCCACAGTCT
3' ss Score
6.24
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
GTCAAACAAAAATATTTGGAAGTAGGTAGGACAATGAAGGAGTATGAAGACAGAAAGTATGAGCAGTGGATGGAGGTGACGGAGCAGGTGCTGCCAGCTCTCATGAAGAAGAGCCTTTTGACCAAG
Seq A exon
TCTTCCATCGCCACAGAGGAGCCTTCGACTTTAGAAAGGGGAGCTGTTTTTGCAATCAACTTTTCACCGGCTCTCAGAGAGATTATTAATGAAACAAAGTACTTAGAGCAGCTGGGGTTCACTGTCCCTGAATTAGCAAGAAATGTTGCTCTCCAGGAAGACAAATTCCTTAG
Seq C2 exon
GTACACAGCTGGGATACAGCGCATGTTGGATCATTATCACATGCTCATAGGAACGTTAAACGATGCGGAGTCTGTGCTTCTCAAAGATCATTCCCAGGAACTGCTCCGAGTGTTTAGGTCGGGATATAAGAGGTTGAACTGGAACTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(18.6=100)
A:
PF083857=DHC_N1=FE(25.8=100)
C2:
PF083857=DHC_N1=FE(23.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGGTAGGACAATGAAGGAGT
R:
AGTGAGTTCCAGTTCAACCTCT
Band lengths:
256-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains