MmuEX0014949 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125231131-125234728:+
Coord C1 exon
chr5:125231131-125231256
Coord A exon
chr5:125233538-125233710
Coord C2 exon
chr5:125234577-125234728
Length
173 bp
Sequences
Splice sites
3' ss Seq
GCACTGTGTCTGTCCTACAGAAT
3' ss Score
9.9
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGAAGCAGAGATACCTGGAGGTGGGGAGGAAGATGAAGGAGTATGAAGACGGGAAGTATGAGCATTGGAAGGAGACCACAGAGCAGAGCCTCCCAACCCTCATGAAGAAGAGCCTGCTCACCAAG
Seq A exon
AATATCATCACAGCTGAGGACTCAGCGATCATAGACAGGGGGACCACGTTTATTATCAACTTCTCTCCCGTTCTTAAAGAGATTATTAATGAAACCAAGTACTTAGAGCAGCTGGGATTCACCATCCCTGAACTGGCGAGGAACGTGGCCCTCCAGGAAGACAAATTCCTCAG
Seq C2 exon
GTATACAGAGGGGATCCAGCGCATGCTGGATCACTACCACCTGCTCATCAACACGCTGAACGAGGCAGAGACAGCGCTCCTGGATGACCACTCCCAGGAGCTGCTCCGCGTCTTCCGGTCTGGGTACAAGAGGCTGAACTGGAACTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(18.6=100)
A:
PF083857=DHC_N1=FE(25.7=100)
C2:
PF083857=DHC_N1=FE(22.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGGGGAGGAAGATGAA
R:
CCTCTTGTACCCAGACCGGAA
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: