GgaEX1020156 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4896199-4897643:-
Coord C1 exon
chr15:4897470-4897643
Coord A exon
chr15:4897045-4897214
Coord C2 exon
chr15:4896199-4896350
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTTCTTGTGTTGTAGACA
3' ss Score
10.27
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GTCAAGCAAATATATCTTAAAGTGGCCAAGAGGATGAAAGAATATGAAGATCAGAAATATGATCAGTGGAGACATGAGACAGAAAAGATGCTCCCACTGTTATTGGAAAAAACTCTGCTGATAGTCATTACTGATGGGCCGGCAACTCATGTTAGTCTAGAGACTTTTGATCAG
Seq A exon
ACATCAGTAAAAGAGGAGTCTATCACCACAGAGAAAAGTGTCCAATTCCTAGTGAATTTTTCTCCCAGACTCCAAGAGATTATAACTGAAACAAAGTACATGGAACAGCTGGGGTTTCCAGTCCCAGAAATAGCAAGAAACGTGGCATTACAGGAAGACAGATATATTAG
Seq C2 exon
GTATGCAAATGGATTAAAACATATGCTGGATGACTATCACAATGTAGTAGGAACACTGAATGAAGCAGAAACCAAACTTCTTGATGACCATATTCAAGAGCTCTGGAAAGTATTCAAACTAGGGCAAAGAAGACTCAACTGGAACTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.070 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(21.5=100)
A:
PF083857=DHC_N1=FE(24.6=100)
C2:
PF083857=DHC_N1=FE(22.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACAGAAAAGATGCTCCCAC
R:
CCAGTTGAGTCTTCTTTGCCCT
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]