GgaINT0008921 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4896199-4897214:-
Coord C1 exon
chr15:4897045-4897214
Coord A exon
chr15:4896351-4897044
Coord C2 exon
chr15:4896199-4896350
Length
694 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
ATGTGTTTTACACTTATTAGGTA
3' ss Score
5.79
Exon sequences
Seq C1 exon
ACATCAGTAAAAGAGGAGTCTATCACCACAGAGAAAAGTGTCCAATTCCTAGTGAATTTTTCTCCCAGACTCCAAGAGATTATAACTGAAACAAAGTACATGGAACAGCTGGGGTTTCCAGTCCCAGAAATAGCAAGAAACGTGGCATTACAGGAAGACAGATATATTAG
Seq A exon
GTAAAGCTGTAACTGCTTGCATACACACTTGCATCAATGTTTCAAGTGATTTCCCTGCAAACCTCAGTGTGTCCTGAGTCCTCAAATTTTGGAAATATGAGAGCTCTTACTGACCTCTTTTAAAGACGAAATTGCTAATGGCCATAACACGCTAACAGTCTGTCCTCTGGTGCTGTCTACATCCTTCACCCTGTAAAGACTGCGTTTTACAAATGAATATCGGAAGAAAATCTGAAGGAAAAACAAAGCATGAAAGTTAGTTGGTTTTTTGTTTGTTTTTGCCATGAACTGCTCATCTAATGTAAATTTCAGTTAACGTTTGAACTTGCTGCTGCTTTCTTGTGCAGCATTGAATAAGTCACTTTTGCCCCAGTTATCACAGACGTTTAGGCACATAAAAATGCCAACAAGAGCCCTAACTGGACTTTAAAATTTATTTACTTTATTTCTTTATGTGCTTCAGTCTGAGGTTTGTTTAAGACAAACACTTTGTTGGACCAGGAGAGGTTGTTCTAGCTGCTATTGGGATCGTGTGGGATTTTTCTTTTGTTTTTGAAAGGAAGTGAATTGCATATATGATCAATACATATTCCATAGTTGTTCCTGCAGATTTTTATTTATGTTCAGAATGATGTTTCCAGTGTACAATTTTTATATTCTTTTTGTTGCTGTTAATGTGTTTTACACTTATTAG
Seq C2 exon
GTATGCAAATGGATTAAAACATATGCTGGATGACTATCACAATGTAGTAGGAACACTGAATGAAGCAGAAACCAAACTTCTTGATGACCATATTCAAGAGCTCTGGAAAGTATTCAAACTAGGGCAAAGAAGACTCAACTGGAACTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(24.6=100)
A:
NA
C2:
PF083857=DHC_N1=FE(22.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGTAAAAGAGGAGTCTATCACC
R:
AGGAGTTCCAGTTGAGTCTTCT
Band lengths:
318-1012
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]