MmuINT0050575 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125233538-125234728:+
Coord C1 exon
chr5:125233538-125233710
Coord A exon
chr5:125233711-125234576
Coord C2 exon
chr5:125234577-125234728
Length
866 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCCTGTGCTGGGCACTCAGGTA
3' ss Score
5.06
Exon sequences
Seq C1 exon
AATATCATCACAGCTGAGGACTCAGCGATCATAGACAGGGGGACCACGTTTATTATCAACTTCTCTCCCGTTCTTAAAGAGATTATTAATGAAACCAAGTACTTAGAGCAGCTGGGATTCACCATCCCTGAACTGGCGAGGAACGTGGCCCTCCAGGAAGACAAATTCCTCAG
Seq A exon
GTGAGAAGATCCCTCTTCAATCAGAGGGGACACTTTTGGTCTCAGGGCCTCTTGACACTATTTTGATGTTGTTTTTAAGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGAATGAAATAAGGCCTCTATATAGAGTTGGAGGCTGTCCTGGAACTCGCTCCATAGACCAATCAGGCTTCAAACTCACAGAAATCCTCCTGCCTCTGCCTCCCCGGTGCTCAGGTTAAAGACACATGCCATGGTGCCCAGCTCATTTCTTTAAAAAGTATTATTCTTGTATTTACAGTTTCACTTATGCATGCCTTGCATCCTGTCTGCTCTCACCCCACCCCTCCCATCCCTGCCAGCCCTCCCCCTTCTCACAAATCTCTCTCTTGCACATTCACTTCTTCCTGTACTGTTTTGTGACCTGCGATTAGCCAGGTCTGTGTGACTGAGGGTTGGAGCTGTAACTGGTAAGAGCCTGGTGGTCTCGGCACAAGGGTACATGGCAAAAGATGGTGGGTACCCCTCCCCAAGTCTAGCCACATGAAGCTTTAGCACTGGAGGCGTGTAACTAGCAGCACTGGTCACATCAGGAGTCAACAAGAGGCAGTGTTCACACACAGAGTTGCTTCTCTGGGCGCAAAACTTTAGCAGGCCCTTCCACCGATGCAACAACTACCCCATGATGCTAGGGATGGACAGGCCTTGTGCTTGCACACTCTCGGGCCCTGAGTCTCATCCCTGCCCGCCCTCTGTGAATGTCCTGATGGAAGATGCTGGGGAACCAGGCCACTGGGGGACATGGTACTATCGTTCTTAAGGTCATGTCCTACCCTGCATCTCTCACTGTCTCCTGTGCTGGGCACTCAG
Seq C2 exon
GTATACAGAGGGGATCCAGCGCATGCTGGATCACTACCACCTGCTCATCAACACGCTGAACGAGGCAGAGACAGCGCTCCTGGATGACCACTCCCAGGAGCTGCTCCGCGTCTTCCGGTCTGGGTACAAGAGGCTGAACTGGAACTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(25.7=100)
A:
NA
C2:
PF083857=DHC_N1=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCACAGCTGAGGACTCA
R:
AGTGAGTTCCAGTTCAGCCTCT
Band lengths:
320-1186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: