DreINT0009164 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27721236-27721665:+
Coord C1 exon
chr5:27721236-27721393
Coord A exon
chr5:27721394-27721513
Coord C2 exon
chr5:27721514-27721665
Length
120 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TCTGAATGTTTTGCATGCAGGTA
3' ss Score
7.68
Exon sequences
Seq C1 exon
GGCTCGGAGAAGGTTTTGGAAAGGGATGTGCGCTTTTCTGTTAATTTTCCTCCTGAACTGCAAGAAATCATATCTGAGGCCAAATGTCTGGACCGTATAGGCATAGTATTACCAGATGAGCTGCAAAATGTTGCTCTGCAGGAGGAGGTGTTTCTGAG
Seq A exon
GTAGGATAAATATGTGTGAACTACAACAGTAATTCATTTCTAAATTCATTTACTAAATCTTTATGACCAAAACGGTGCTTTTACTACCTCGTTCATGTAATCTGAATGTTTTGCATGCAG
Seq C2 exon
GTACATAAATGGACTGAAGAAATTAGTGAGGCGTTACCATTTGTTAATGGATAATCTAAATGACGCAGAGTTTTTACTAATGGCTGACCAGGTGCAGGAACTGAGGCAAGTGTTAAGCGTTGGGTGCAAAAGAATCAACTGGAATAATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(8.8=100)
A:
NA
C2:
PF083857=DHC_N1=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTGGAAAGGGATGTGCGC
R:
CTGCACCTGGTCAGCCATTAG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]