HsaINT1011292 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123800216-123801432:+
Coord C1 exon
chr12:123800216-123800388
Coord A exon
chr12:123800389-123801280
Coord C2 exon
chr12:123801281-123801432
Length
892 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
3' ss Seq
GACATTCCTGTCATGTGCAGGTA
3' ss Score
9.53
Exon sequences
Seq C1 exon
TCTTCCATCGCCACAGAGGAGCCTTCGACTTTAGAAAGGGGAGCTGTTTTTGCAATCAACTTTTCACCGGCTCTCAGAGAGATTATTAATGAAACAAAGTACTTAGAGCAGCTGGGGTTCACTGTCCCTGAATTAGCAAGAAATGTTGCTCTCCAGGAAGACAAATTCCTTAG
Seq A exon
GTAAAAAAATTCTTCTTTTAAATTAGCAGTAAGCTTTTTGTTCTTGGGACCCCTTTACGCTCTTAAAAATTATTGAGGACCCCTCCAAAAGCTTTCATTTTTGTGGATTTTATAATTATGAATTCTTACCACATTAGAAATTGAAGCTAAGGCCTGGGCGTTGTGGTGCTACCTGTAGTCTCAGCTACTTGGGAGGCTTAGGTGGGAGGATTCCTTGAACCTGGGAGATTGAGGCTGCAGTGAACCGTGATTGCTCTATCTCCAGCCTGGGAGACAGAGCGAGAGCCTGTATCCAAAAAAAAAAAAAGAAGAAAAAAAAATTGAAGCTAAGAAAAGTTTAAAATATGGGGTTGGGTGTGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCGAGGCGGGCAGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAACTACAAAAATTAGCTGGGCATGGTGGCTCATGCCTGTAGTCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCCTGAACCTGGCAGGCAGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTAGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAGAAAAGTTTAAAATAGGGATCAACAATAGTAAACCTATTTCATGTAATATAAATAACATCTTTAATGAGAAGTAACCAATATTTTCCAAAAAAGAAAGTTAATGAGAAGAGTGATGTTTTAAATTTCTGCAAATCTCTTGATCAAGGTTGGTCTTGATTGAGACCACGGTCTTTTGTAATCTCTTGACCGCAAAAGCTTTTGATGAGCTTAAAGGTGCTCTCCTCAGGTTTATGACATTCCTGTCATGTGCAG
Seq C2 exon
GTACACAGCTGGGATACAGCGCATGTTGGATCATTATCACATGCTCATAGGAACGTTAAACGATGCGGAGTCTGTGCTTCTCAAAGATCATTCCCAGGAACTGCTCCGAGTGTTTAGGTCGGGATATAAGAGGTTGAACTGGAACTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(25.8=100)
A:
NA
C2:
PF083857=DHC_N1=FE(23.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCATCGCCACAGAGGAG
R:
AGTGAGTTCCAGTTCAACCTCT
Band lengths:
323-1215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains