BtaINT0050162 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54160149-54161595:-
Coord C1 exon
chr17:54161423-54161595
Coord A exon
chr17:54160301-54161422
Coord C2 exon
chr17:54160149-54160300
Length
1122 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
3' ss Seq
GACTTTCCTGTAATGTACAGGTA
3' ss Score
7.35
Exon sequences
Seq C1 exon
ACTTCTGCCGCTGGTGATGATGCCACAAACCCTGACAGAGTGGCTGCTTTCTCAATCAACTTTTCACCTGCTCTCAGGGAGATTATTAATGAAACAAAGTACTTGGAACAGCTAGGTTTCCCTGTCCCCGAATTAGCAAGGAACATTGCTCTCCAGGAGGACAAATTTCTTAG
Seq A exon
GTAAACGGATTCTTCTTTTAAATCAGCGGTCAACACTTCTTATCTTGGGACCCCTTTACACTCTTCTAAATTATTGAGAACCACCCCCCTGCCCATACCAGGGCTTTCATTTTTGTGGATTTTATAACTATCAATGTTCACCGCATTAGAAATGAAAACTAAGAAATGTTTAAAATTTGTATTAATACATTTGTCTGAAATAGTAAAGATAAACATTTCATGTTAACTTAAATAGCACTTTTATTTTTTAATTAATTTTCATTGGAGTATAGTTGATTTGGGGGCTTCCCTGGTGGCTCAGATGGTAAAGAATCTGCCTGCAATGCAGAAGACCTGGGTTTGATCCCTGGGTTGGGAAAACCCCCTGGAGAAGGGAATGGCAAACCCACTCCAGTATTCCTGCTGGAGAATTCCACGAACAGAGGAGCCTGGTGGGCTATAGTCCATGATGTCGCCAAGAGTCAGACATGACTGAGGAACTTTCAATATGACTATAGTTGATTTATAATGTTGTGTTAATTTCTGCTGTACAGCAGAGTGAGTCAGTTATAAATGATTCTACATCAGTTACACGTACATGCTGCCCAGGGGGCACTAGTGGTAAAGAACCCACCTACCAGTGAAGGTACATGTAAGCGACATGGGTTCCATCCCTGGGTCAGGAAGATCCCCTGGAGGAGGGCTTGGCAACCCCCTCCAGGATTCTTGGACATGGGTTCCATCCCTGGGTCAGGAAGATCCCCTGGAGGAGGGCTTGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCGGGCTGCAGTCTATAGCGTCACAAAGGGTTGGACATGACTGAAGCAACTTAGCGTGCACACATATATACATACTCTCTTTTTTTAGATCGTTTTCCTGTATAGGTCGTTACAGGGTATTGAGTGGAGTTCCCTATAAGTAATGTTTTTAAATTAAAAAGTAACCAATATTTTCCAAAAAGGAAAGTTTTTGGGAAGAGTGACATTCTTTTAAATTTTTAGTCTGGCATTGGTCTTTTGTAACGTATTATAAGATTATTGAGTTTTTTGAGCTCCATTTTTCTAATGTCAGTGACTTTCCTGTAATGTACAG
Seq C2 exon
GTACACAGATGGGATACAACGTATGTTGGATCATTATCACATGCTCACAGGAACGTTAAATGAGGCAGAGTCTCTTCTTCTTGATGACCATTCCCAGGAATTATTAAGAGTGTTTAGATCTGGATACAAGAGGTTGAACTGGAACTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(25.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCCGCTGGTGATGATG
R:
AGTGAGTTCCAGTTCAACCTCT
Band lengths:
322-1444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development