GgaINT0008921 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4942861-4943834:-
Coord C1 exon
chr15:4943707-4943834
Coord A exon
chr15:4943013-4943706
Coord C2 exon
chr15:4942861-4943012
Length
694 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
ATGTGTTTTACACTTATTAGGTA
3' ss Score
5.79
Exon sequences
Seq C1 exon
CAATTCCTAGTGAATTTTTCTCCCAGACTCCAAGAGATTATAACTGAAACAAAGTACATGGAACAGCTGGGGTTTCCAGTCCCAGAAATAGCAAGAAACGTGGCATTACAGGAAGACAGATATATTAG
Seq A exon
GTAAAGCTGTAACTGCTTGCATACACACTTGCATCAATGTTTCAAGTGATTTCCCTGCAAACCTCAGTGTGTCCTGAGTCCTCAAATTTTGGAAATATGAGAGCTCTTACTGACCTCTTTTAAAGACGAAATTGCTAATGGCCATAACACGCTAACAGTCTGTCCTCTGGTGCTGTCTACATCCTTCACCCTGTAAAGACTGCGTTTTACAAATGAATATCGGAAGAAAATCTGAAGGAAAAACAAAGCATGAAAGTTAGTTGGTTTTTTGTTTGTTTTTGCCATGAACTGCTCATCTAATGTAAATTTCAGTTAACGTTTGAACTTGCTGCTGCTTTCTTGTGCAGCATTGAATAAGTCACTTTTGCCCCAGTTATCACAGACGTTTAGGCACATAAAAATGCCAACAAGAGCCCTAACTGGACTTTAAAATTTATTTACTTTATTTCTTTATGTGCTTCAGTCTGAGGTTTGTTTAAGACAAACACTTTGTTGGACCAGGAGAGGTTGTTCTAGCTGCTATTGGGATCGTGTGGGATTTTTCTTTTGTTTTTGAAAGGAAGTGAATTGCATATATGATCAATACATATTCCATAGTTGTTCCTGCAGATTTTTATTTATGTTCAGAATGATGTTTCCAGTGTACAATTTTTATATTCTTTTTGTTGCTGTTAATGTGTTTTACACTTATTAG
Seq C2 exon
GTATGCAAATGGATTAAAACATATGCTGGATGACTATCACAATGTAGTAGGAACACTGAATGAAGCAGAAACCAAACTTCTTGATGACCATATTCAAGAGCTCTGGAAAGTATTCAAACTAGGGCAAAGAAGACTCAACTGGAACTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.3=100)
A:
NA
C2:
PF083857=DHC_N1=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTAGTGAATTTTTCTCCCAGAC
R:
CTAAGGAGTTCCAGTTGAGTCTTCT
Band lengths:
278-972
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]