BtaEX6072230 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54097387-54102138:-
Coord C1 exon
chr17:54101878-54102138
Coord A exon
chr17:54098864-54099036
Coord C2 exon
chr17:54097387-54097480
Length
173 bp
Sequences
Splice sites
3' ss Seq
CGGGTCTTTTCATTCTGTAGGTG
3' ss Score
9.95
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTGGATGAATATGGCACACAGCAGCCAATTGCCCTGCTGAAACTGCTCTTGGAAAAAGGCTTCTTGTATGACCGGGGGAAGGAGCTGAACTGTAAAAGCATCCGTGACCTCGGCTTTATTGCTGCGATGGGGAAAGCTGGAGGAGGCCGCAACGAAGTCGATCCAAGATTTACTTCGCTCTTCAGTGTCTTCAACATTCCCTTTCCTTCCGAGGAGTCTTTGCACTTAATTTATTCCTCTATCCTCAAAGGCCACACCTCG
Seq A exon
GTGTTTCATGAGAGCATCGTGGCTGTGAGTGACAAGCTGACATCCTGCACGTTGACTCTTTACAAAAACATTGTTCAGGATCTGCCGCCCACCCCGTCCAAGTTCCATTACATCTTTAACCTTCGAGATCTCTCACGGGTTTATAACGGTCTTGTCCTCACTAACCCCGAACG
Seq C2 exon
ATTCCAGACGGTGACCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTCCATGACCGGTTGATCAATGAAACAGACAAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'48-52,'48-51,49-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(32.1=100)
A:
PF127752=AAA_7=FE(21.3=100)
C2:
PF127752=AAA_7=PD(5.2=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTGCCCTGCTGAAACTGC
R:
ATCTGGGTCACCGTCTGGAAT
Band lengths:
257-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]