MmuEX6021061 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125281167-125283771:+
Coord C1 exon
chr5:125281167-125281427
Coord A exon
chr5:125282083-125282255
Coord C2 exon
chr5:125283678-125283771
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTTTTTTCTTTAAGACC
3' ss Score
8.16
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GTGGATGAGTATGGTACCCAGCAGCCCATCGCTTTGCTGAAGCTGTTGCTAGAAAAGGGCTACTTATATGACCGTGGGAAAGAACTCAACTGTAAGAGTATCCGTGATCTGGGCTTCATCGCTGCTATGGGGAAGGCAGGAGGGGGCCGCAACGAGGTGGACCCCAGATTCCTCTCACTGTTCAGCGTCTTCAATGTCCCTTTCCCATCGGAGGAGTCCCTGAACTTGATCTACTACTCCATTCTGAAGGGTCACACCTCG
Seq A exon
ACCTTTAACGAGAGCATCGGCGGCGTGAGCAGGAAGCTGACATTTTGCACATTAACACTTTACAAAAACATCGTTCAAGATCTGCCTCCCACCCCTTCCAAGTTCCATTACATCTTCAACCTCCGAGACCTCTCCAGGGTTTTTAATGGCCTTGTCCTTACTAATCCAGATCG
Seq C2 exon
GTTTCAGACAGTGTCCCAGATGGTGAGGGTGTGGAGAAATGAGTGCTTGCGGGTTTTCCATGACCGGCTCATCAACGAAGTAGACAAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'47-50,'47-49,48-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(32.0=100)
A:
PF127752=AAA_7=FE(21.2=100)
C2:
PF127752=AAA_7=PD(5.2=43.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTATCCGTGATCTGGGCT
R:
TTCGTTGATGAGCCGGTCATG
Band lengths:
246-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: