DreEX6011112 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27749041-27752148:+
Coord C1 exon
chr5:27749041-27749301
Coord A exon
chr5:27749530-27749702
Coord C2 exon
chr5:27752055-27752148
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATGTCTATTTTATTTTATAGCCC
3' ss Score
8.93
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
Exon sequences
Seq C1 exon
GTGGATGAATATGGAACTCAACAACCTATAGCTCTCCTCAAGCTTCTGTTGGACAGGGGTGGCATGTATGACCGAGGAAAAGAACTCAACTATAAACTCATAAAGGACCTGGGCTTCATTGCAGCCATGGGGAAGGCAGGCGGTGGTAGGAATGAAGTGGACCCACGATTCATCTCTCTTTTCAGTGTGTTCAACATCCCCTTCCCTGAGGAGGAATCCCTACATCTCATCTACTCTTCTATTCTAAGAGGACACACCAAG
Seq A exon
CCCTTTGAGGAGTGCATCCGAAACATCTGTGACAAGCTGACGTTTTGCACTCTGGAGCTGTACAAAACCATAATTAAGGATTTACCGCCAACACCTTCCAAGTTCCACTACATCTTTAACCTGAGAGATCTCTCCAGAGTCTACCATGGCCTGACGCTGACCAACCCTGAGAG
Seq C2 exon
GTTCTGCACAGTCACCCAGTTTGTTCGTGTTTGGAGGAATGAATGTTTAAGGGTCTTTCATGACAGACTTATCAATGAAACTGACAAAATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'52-49,'52-48,53-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(31.6=100)
A:
PF127752=AAA_7=FE(21.0=100)
C2:
PF127752=AAA_7=PD(5.1=43.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTTCTGTTGGACAGGGG
R:
ACAAACTGGGTGACTGTGCAG
Band lengths:
247-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]