BtaEX6072235 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54088872-54092964:-
Coord C1 exon
chr17:54092793-54092964
Coord A exon
chr17:54089871-54090074
Coord C2 exon
chr17:54088872-54088952
Length
204 bp
Sequences
Splice sites
3' ss Seq
TGCTGGCCTTTGTTTTCTAGGCA
3' ss Score
9.5
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
GTGTTTGAGATCCTCCTGAGCCGGGGCTACTCTGAGAACAACTTCCGGGACGACCTGAAGAACCTTTACCTGAAACTTGGCATTGAGAACAAGATGATGATCTTCCTGTTCACGGATGCCCACGTGGCCGAGGAGGGTTTCCTGGAGCTCGTCAACAACATGCTCACCTCAG
Seq A exon
GCATCGTACCCGCGCTTTTCCCAGACGAGGAAAAGGAGTCTATCCTCAGTCAGATTGGGCCAGAGGCTTTGAAGCAAGGGACAGGCCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAGAGTGCCAACAACCTGCACATCGTCCTGGGCATGTCGCCGGTGGGGGACACCCTGAGGACCCGCTGCAGAAATTTCCCAG
Seq C2 exon
GTCTGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCTCAAGCTCTGCATGCAGTTGCGAAGTCATTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'53-58,'53-57,54-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(21.3=100)
A:
PF127802=AAA_8=FE(25.4=100)
C2:
PF127802=AAA_8=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGAGATCCTCCTGAGCC
R:
CTAAAAATGACTTCGCAACTGCA
Band lengths:
253-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]