HsaEX6069940 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123887142-123894723:+
Coord C1 exon
chr12:123887142-123887313
Coord A exon
chr12:123893233-123893436
Coord C2 exon
chr12:123894643-123894723
Length
204 bp
Sequences
Splice sites
3' ss Seq
AGCATGTCTTCCTTTTCCAGGAA
3' ss Score
10.57
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAGTTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTTGGGATTGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCTGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAG
Seq A exon
GAATTGTACCTGCGCTTTTTTCTGAAGAGGAGAAAGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCTGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAG
Seq C2 exon
GTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTCGCAAAGTCCTTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'70-68,'70-67,71-68=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(21.3=100)
A:
PF127802=AAA_8=FE(25.4=100)
C2:
PF127802=AAA_8=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGAGATCCTGCTGAGCC
R:
TAGAAAGGACTTTGCGACCGC
Band lengths:
252-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains