DreEX6011108 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27752782-27755260:+
Coord C1 exon
chr5:27752782-27752953
Coord A exon
chr5:27754880-27755083
Coord C2 exon
chr5:27755180-27755260
Length
204 bp
Sequences
Splice sites
3' ss Seq
ACATCAGTTTTTGTCATCAGGGA
3' ss Score
6.55
5' ss Seq
CAGGTTATT
5' ss Score
3.49
Exon sequences
Seq C1 exon
GTGTTTGAAATTGTGCTTAGTAGAGGATACTCAGAGACTAACTTTCGGGATGATCTGAAAACTCTGTACCTCAAACTGGGTATAGAGAATAAGAAAATGGTTTTCCTGTTCACTGATGCTCATGTGGCCGAGGAAGGTTTTCTGGAGCTCATCAACAACATGCTTACATCAG
Seq A exon
GGATGGTTCCAGCACTGTTTGCTGATGATGAGAAGGAATCAGTCCTAAACCAGCTGCGAGATGAAGCTATGAAATCAGGCTGTGGTCCTTCGAAAGAGAGTATATGGCAATATTTTGTCAACAAAAGTGCCAACAACTTGCATATAGTGCTGGCCATGTCACCTGTAGGAGACACTCTCAGAACACGCTGCAGGAATTTCCCAG
Seq C2 exon
GGTTGGTTAATAACACAAGCATTGACTGGTTCTCTCCATGGCCTCTTCAGGCTCTATATGCAGTGGCCAAGTCATTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'57-55,'57-54,58-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(21.3=100)
A:
PF127802=AAA_8=FE(25.4=100)
C2:
PF127802=AAA_8=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGAAATTGTGCTTAGTAGAGG
R:
TAAGAATGACTTGGCCACTGCA
Band lengths:
252-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]