GgaEX6013580 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4919894-4921967:-
Coord C1 exon
chr15:4921796-4921967
Coord A exon
chr15:4920749-4920952
Coord C2 exon
chr15:4919894-4919974
Length
204 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCTATATGTTACAGGAA
3' ss Score
9.39
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTATTTGAGATCATCTTGACTCGGGGATATAGGGAAAATAACTTCCGAGAAGACCTGAAAAGCTTGTACCAGAAGCTTGGTATTGAGAATAAGTCAATAGTCTTCTTGTTTACAGATGGCCATGTAGCAGAAGAGAGTTTCTTGGAGCTCATCAATAACATGTTAACTTCAG
Seq A exon
GAATGGTGCCAGCCCTTTTTGCAGATGATGAAAAAGACAGCATACTAAGTCAGATTGGAGACGAAGCTATTAAAGCTGGTGTGAACCCGGCTAAACAGAGTGTCTGGCAATATTTTGTAAACAAATGTGCAAGCAATCTTCATATTGTCCTGGGAATGTCCCCAGTTGGGGACAGTCTGAGAACGTGGTGCAGAAATTTCCCAG
Seq C2 exon
GTCTTGTCAACAATACTGGTATTGACTGGTTCTTGCCCTGGCCCCCCCAAGCTCTGTATGCGGTTGCCAAATCCTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'50-51,'50-50,51-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(21.3=100)
A:
PF127802=AAA_8=FE(25.4=100)
C2:
PF127802=AAA_8=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTTGAGATCATCTTGACTCGGGG
R:
AACAAAGGATTTGGCAACCGC
Band lengths:
252-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]