BtaEX6072237 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54084259-54088952:-
Coord C1 exon
chr17:54088872-54088952
Coord A exon
chr17:54085111-54085308
Coord C2 exon
chr17:54084259-54084420
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTCCATTCCTTCCTGTTCAGGAA
3' ss Score
9.65
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCTGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCTCAAGCTCTGCATGCAGTTGCGAAGTCATTTTTAG
Seq A exon
GAACTAATCAGATGATCCCGGCAGAAAATATAGAAGATCTGGTAGAACATGTTGTTTTGGTCCACGAATCCGTGGGTGAATTCAGCAAACAATTCCTACAGAAACTGAGGCGCTGCAACTATGTGACTCCGAAGAACTACCTGGATTTTATTAACACGTATTCAAAATTACTGGATGAGAAAACTCAGTATAATATAG
Seq C2 exon
CTCAGTGCAAGCGTCTGGAGGGAGGCCTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGATGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCGGCTGCTTGCGAGGCCCTACTGGAGGAGATCGCCACAAATACAGCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'55-60,'55-59,56-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(10.1=100)
A:
PF127802=AAA_8=PD(21.3=85.1)
C2:
PF127772=MT=PU(15.1=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTAAATAACACTGGTATTGACT
R:
CTATGGCTGTATTTGTGGCGA
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]