GgaEX0004154 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4918443-4919974:-
Coord C1 exon
chr15:4919894-4919974
Coord A exon
chr15:4919293-4919490
Coord C2 exon
chr15:4918443-4918604
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTGACCAATTTTAGGAA
3' ss Score
8.93
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCTTGTCAACAATACTGGTATTGACTGGTTCTTGCCCTGGCCCCCCCAAGCTCTGTATGCGGTTGCCAAATCCTTTGTTG
Seq A exon
GAAGTAACACACGCATTCCAGCAGAGAGCTCCAAGATGGTGGTTGAGCACATGGTTGTGGTGCATGAATCTGTAGAGATTTTCAGCAAGAGGTTTCTGCAGAAATTAAGGCGTAGTAACCATGTCACGCCAAAGAATTACCTTGATTTTATCCATATGTATTCAAAATTGCTTGAGGAGAAAAATGAGTTCATTTTAG
Seq C2 exon
TACAATGCAAACGGCTGGAGGGGGGCCTAGATAAACTGAAGGAAGCTAGTGTGCAGCTGGTTGAGCTGAACAAGAAACTTGCAGAGCAAAAGATCGTGCTAGCAGAAAAATCAGCTGCTTGTGAGGCTTTGTTAAAAGAGATTTCAGCAAACACAGAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'52-53,'52-52,53-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(10.1=100)
A:
PF127802=AAA_8=PD(21.3=85.1)
C2:
PF127772=MT=PU(15.1=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTATTGACTGGTTCTTGCC
R:
ACTTCTGTGTTTGCTGAAATCTCT
Band lengths:
227-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]