MmuEX6021056 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125289584-125293092:+
Coord C1 exon
chr5:125289584-125289664
Coord A exon
chr5:125291819-125292016
Coord C2 exon
chr5:125292931-125293092
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGCCTTCCACTGCAGGCG
3' ss Score
10.33
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCCTAGTGAACAACACCGGCATTGATTGGTTCATGCCCTGGCCACCTCAGGCCTTGCATGCAGTGGCCAAGTCGTTTTTAG
Seq A exon
GCGATAACTCCATGATTCCCGATGAGAAACTTGAGGAGCTTGTGGAGCACGTGGTCATGGTCCACCAGTCGGTGGGCGAGTTCAGCAAGCAGTTCCAGCAGAAGCTGAGGCGGAGCAACTATGTGACGCCCAAGAACTACCTAGACTTCATTAATACCTACTCAAAACTACTAGATGAGAAAACCCAGTACAACATAG
Seq C2 exon
CCCAGTGCAAGCGTCTGGAAGGAGGGCTGGACAAGCTGAAGGAGGCGACCATCCAGCTGGACGAGCTGAACCTGAAGCTGGCAGAGCAGAAGATCGTCCTGGCCGAGAAGTCAGCCGCCTGCGAGGCCCTGCTGGAGGAAATCGCCACCAACACAGCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'54-57,'54-56,55-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(10.1=100)
A:
PF127802=AAA_8=PD(21.3=85.1)
C2:
PF127772=MT=PU(15.1=92.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACCGGCATTGATTGGT
R:
CTATGGCTGTGTTGGTGGCG
Band lengths:
234-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: