HsaEX6069938 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124379190-124383361:+
Coord C1 exon
chr12:124379190-124379270
Coord A exon
chr12:124382317-124382514
Coord C2 exon
chr12:124383200-124383361
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTTATTCCTTCCTCTTCAGGGT
3' ss Score
11.3
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTCGCAAAGTCCTTTCTAG
Seq A exon
GGTATAATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTGAAGCATGTTGTCTTGGTTCACCAATCCGTGGACCACTACAGCCAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTAACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTGTAATATAG
Seq C2 exon
CTCAGTGCAAGCGTCTGGATGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'58-59,'58-58,59-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(10.1=100)
A:
PF127802=AAA_8=PD(21.3=85.1)
C2:
PF127772=MT=PU(15.1=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACACTGGTATTGACTGGTTCA
R:
CTACAGCGGTGTTGACGGC
Band lengths:
234-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)