BtaEX6072255 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54045421-54046198:-
Coord C1 exon
chr17:54046067-54046198
Coord A exon
chr17:54045681-54045892
Coord C2 exon
chr17:54045421-54045588
Length
212 bp
Sequences
Splice sites
3' ss Seq
AAAACGTGTCCTGGTTTCAGGGG
3' ss Score
6.97
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
AAGCCATTGAGGCCCTTCCGCTGGCCAACACGCCTGAAGTGTTTGGTCTTCACCCCAATGCTGAGATTGGATATTACACTCAGGCGGCTCGAGACATGTGGGCTCACCTATTGGAGCTGCAGCCCCAGACAG
Seq A exon
GGGAATCCAGCGCTGGCATCAGCAGAGATGATTACATTGGCCAGGTGGCCAAGGACATAGAAAACAAGATGCCCAAAATCTTTGACTTGGACCTGGTCAGGAAGCACCTTGGGCAGAGCATCTCCCCAACCTCGGTGGTCCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTCGTCATACGGATGACCAGGTCCCTGGCTGAACTTCAGAGG
Seq C2 exon
GCCTTGGCCGGAGAAGTTGGGATGAGCAGTGAATTAGATGACGTAGCCAGGTCTCTTTTTCTTGGGCAAATCCCTAACATCTGGAGAAAGCTTGCCCCTGACACCTTAAAGTCCCTTGGAAACTGGATGCTCTACTTCCTGCGGAGGTTCAACCAGTACACGACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'76-81,'76-80,77-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.2=100)
A:
PF0302810=Dynein_heavy=FE(9.8=100)
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGAGGCCCTTCCGCTG
R:
GTCGTGTACTGGTTGAACCTCC
Band lengths:
292-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]