HsaEX6069918 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123931341-123932108:+
Coord C1 exon
chr12:123931341-123931472
Coord A exon
chr12:123931636-123931847
Coord C2 exon
chr12:123931941-123932108
Length
212 bp
Sequences
Splice sites
3' ss Seq
GAAAAGTGTCCTGGTTTTAGGGG
3' ss Score
4.92
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
AAGCCATCGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACCCCAACGCTGAGATTGGCTATTACACGCAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAG
Seq A exon
GGGAATCCAGCAGTGGTATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGAAATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACAGGACTCTCCCCCACTTCGGTGGTGCTCCTGCAGGAACTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACGAAGTCTCTGGCTGAACTTCAAAGG
Seq C2 exon
GCCTTGGCTGGAGAAGTTGGAATGAGCAATGAGTTAGATGATGTGGCCAGGTCTCTTTTTATCGGGCATATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'101-100,'101-97,102-100=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.2=100)
A:
PF0302810=Dynein_heavy=FE(9.8=100)
C2:
PF0302810=Dynein_heavy=FE(69.6=100),PF154071=Spo7_2_N=WD(100=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCGCTTGCCAACAC
R:
ACAACATGTACTGGCTGAACCG
Band lengths:
285-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains