DreEX6011090 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27773321-27775021:+
Coord C1 exon
chr5:27773321-27773452
Coord A exon
chr5:27774239-27774450
Coord C2 exon
chr5:27774854-27775021
Length
212 bp
Sequences
Splice sites
3' ss Seq
CTGGCATGTATAATTTTTAGGTG
3' ss Score
7.44
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGAGATCGAGTCGCTGCCTCTTGCTAACACTGCAGAGGTGTTTGGTTTGCACCCTAATGCTGAGATTGGATATTACACTCAGGCTGCCCGGGACATGTGGACTCATCTTATTGAGCTCCAACCACAGACAG
Seq A exon
GTGACTCAGGCGGTGGTATCAGTCGAGATGAGTACATCAGCCAGGTGGCGAGGGACATTCAGAGCAAACTGCCTGAAGTGTTTGATCTGGACGTGATCCGCAAGAAGCTGGGACTGGAGATCTCTCCTACATCTGTGGTACTGCTTCAAGAGCTGGAGCGCTTTAACAAACTCACCGTGAGGATGAGCCGCTCTCTGGCTGAGCTACAGCGC
Seq C2 exon
GCTCTGGCTGGTGAAGTGGGAATGAGCAGCGAGTTGGATGAGGTGGCCAGAGCTCTTTTTAATGGGCAGATTCCTGTGATCTGGAGGAAACTGGCACCAGACACTCTGAAATCTCTGGGAAACTGGATGATCCACTTCAAGAGACGACATGAACAGTACAGCTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'80-78,'80-77,82-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.2=100)
A:
PF0302810=Dynein_heavy=FE(9.8=100)
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCGAGTCGCTGCCTCTT
R:
TGAGCTGTACTGTTCATGTCGT
Band lengths:
295-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]