GgaEX1020160 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4857632-4858705:-
Coord C1 exon
chr15:4858574-4858705
Coord A exon
chr15:4857903-4858114
Coord C2 exon
chr15:4857632-4857799
Length
212 bp
Sequences
Splice sites
3' ss Seq
TTAAGCTATTTTTGTTTCAGGTG
3' ss Score
10.05
5' ss Seq
CGTGTACGT
5' ss Score
5.55
Exon sequences
Seq C1 exon
TGGCAATAGAAAGTCTGCCCCTTGCTAATACTCCAGAAGTATTTGGTCTTCACGCCAATGCTGAGATTGGGTATTACACACAGGCAGTTCGTGGTATATGGTCTCATCTTCTCGAGCTGCAGCCTCAAACAG
Seq A exon
GTGAATCTGGTACAGGAGTTAGTCGAGATGAATATATTGCTCACGTTGCTAAGGATATAGAAAACAAAATACCAGAAGTATTTGATCTTAACAAGATACGGAAAGGTTTTGGACTGGACCTATCCCCTACAACTGTGGTGCTGTTGCAGGAATTGGAACGTTTTAATAAACTCATCATTTGCATGGCAAAGTCATTGGCTGAACTGCAGCGT
Seq C2 exon
GCCTTGGCTGGGGAAGTTGGAATGAGCAGTGAGCTGGACGATGTGGCTCGGGCGCTCTTTAACGGACAGATTCCTGGCATCTGGAGGCGGCTGGCCCCCGACACGCTAAAAACACTCGGAAATTGGATTATTTTCTTCAGAGATAGGTATAACCAGTACAACACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_MULTIEX2-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.1=100)
A:
PF0302810=Dynein_heavy=FE(10.4=100)
C2:
PF0302810=Dynein_heavy=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAATAGAAAGTCTGCCCC
R:
CCAGGTGTTGTACTGGTTATACCT
Band lengths:
300-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]