BtaEX6072256 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54043585-54045892:-
Coord C1 exon
chr17:54045681-54045892
Coord A exon
chr17:54045421-54045588
Coord C2 exon
chr17:54043585-54043765
Length
168 bp
Sequences
Splice sites
3' ss Seq
GCTCTTGATTCTGTCAACAGGCC
3' ss Score
8.13
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGAATCCAGCGCTGGCATCAGCAGAGATGATTACATTGGCCAGGTGGCCAAGGACATAGAAAACAAGATGCCCAAAATCTTTGACTTGGACCTGGTCAGGAAGCACCTTGGGCAGAGCATCTCCCCAACCTCGGTGGTCCTCCTGCAGGAGCTGGAACGCTTCAACAAGCTCGTCATACGGATGACCAGGTCCCTGGCTGAACTTCAGAGG
Seq A exon
GCCTTGGCCGGAGAAGTTGGGATGAGCAGTGAATTAGATGACGTAGCCAGGTCTCTTTTTCTTGGGCAAATCCCTAACATCTGGAGAAAGCTTGCCCCTGACACCTTAAAGTCCCTTGGAAACTGGATGCTCTACTTCCTGCGGAGGTTCAACCAGTACACGACATGG
Seq C2 exon
GTCACCGAGAGCGAGCCCAGTGTGATGTGGCTCTCAGGGCTGCACATCCCAGAATCCTACCTCACGGCCCTGGTGCAGGCCACCTGCCGGAGGAACGGCTGGCCACTGGACCGATCCACTCTGTTCACCCAGGTGACCAAGTTCCAGGACGCAGACGAAGTGAATGAGCGGGCAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'77-83,'77-81,78-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.8=100)
A:
PF0302810=Dynein_heavy=FE(7.7=100)
C2:
PF0302810=Dynein_heavy=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTGGGCAGAGCATCTC
R:
ACCTGGGTGAACAGAGTGGAT
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]