GgaEX7009165 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4857198-4858129:-
Coord C1 exon
chr15:4857903-4858129
Coord A exon
chr15:4857632-4857799
Coord C2 exon
chr15:4857198-4857378
Length
168 bp
Sequences
Splice sites
3' ss Seq
CACTGTCACTGTCATTCCAGGCC
3' ss Score
6.85
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTATTTTTGTTTCAGGTGAATCTGGTACAGGAGTTAGTCGAGATGAATATATTGCTCACGTTGCTAAGGATATAGAAAACAAAATACCAGAAGTATTTGATCTTAACAAGATACGGAAAGGTTTTGGACTGGACCTATCCCCTACAACTGTGGTGCTGTTGCAGGAATTGGAACGTTTTAATAAACTCATCATTTGCATGGCAAAGTCATTGGCTGAACTGCAGCGT
Seq A exon
GCCTTGGCTGGGGAAGTTGGAATGAGCAGTGAGCTGGACGATGTGGCTCGGGCGCTCTTTAACGGACAGATTCCTGGCATCTGGAGGCGGCTGGCCCCCGACACGCTAAAAACACTCGGAAATTGGATTATTTTCTTCAGAGATAGGTATAACCAGTACAACACCTGG
Seq C2 exon
GTTAATGAGTGTGAACCAAAGGTGATGTGGCTCTCAGGCCTGCACGTTCCAGAATCTTACCTGACAGCTCTTGTTCAAGCCACCTGCAGGAAAAACAGGTGGCCCCTGGATCATTCCACTCTCTACACCGAAGTGACCAAATACAGGACTGCAGAAGACATCACTGAAGGGCCTACGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'89-100,'89-99,91-100=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.066
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.4=100)
A:
PF0302810=Dynein_heavy=FE(7.7=100)
C2:
PF0302810=Dynein_heavy=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCCTACAACTGTGGTGCT
R:
GTGATGTCTTCTGCAGTCCTGT
Band lengths:
255-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]