DreEX6011089 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27774239-27777081:+
Coord C1 exon
chr5:27774239-27774450
Coord A exon
chr5:27774854-27775021
Coord C2 exon
chr5:27776901-27777081
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGTGTTTCTTCAAAGGCT
3' ss Score
9.08
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GTGACTCAGGCGGTGGTATCAGTCGAGATGAGTACATCAGCCAGGTGGCGAGGGACATTCAGAGCAAACTGCCTGAAGTGTTTGATCTGGACGTGATCCGCAAGAAGCTGGGACTGGAGATCTCTCCTACATCTGTGGTACTGCTTCAAGAGCTGGAGCGCTTTAACAAACTCACCGTGAGGATGAGCCGCTCTCTGGCTGAGCTACAGCGC
Seq A exon
GCTCTGGCTGGTGAAGTGGGAATGAGCAGCGAGTTGGATGAGGTGGCCAGAGCTCTTTTTAATGGGCAGATTCCTGTGATCTGGAGGAAACTGGCACCAGACACTCTGAAATCTCTGGGAAACTGGATGATCCACTTCAAGAGACGACATGAACAGTACAGCTCATGG
Seq C2 exon
GTGAATGAAGGAGAGCCGTACGTGATGTGGCTCTCAGGTTTGCATATCCCTGAATCGTACCTGACTGCGTTGGTCCAGGCCACGTGCAGGAAGAACGGCTGGCCTCTGGATCACTCTACTCTCTACACACAGGTCACACAATACAGCAGCGAGGACCAGGTCAAAGAGAGACCAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'82-79,'82-78,83-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.8=100)
A:
PF0302810=Dynein_heavy=FE(7.7=100)
C2:
PF0302810=Dynein_heavy=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGGTATCAGTCGAGATG
R:
ACCTGAGAGCCACATCACGTA
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]