MmuEX6021036 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124830327-124832630:+
Coord C1 exon
chr5:124830327-124830538
Coord A exon
chr5:124830633-124830800
Coord C2 exon
chr5:124832450-124832630
Length
168 bp
Sequences
Splice sites
3' ss Seq
AGTCTCCATCCTGCCCCCAGGCC
3' ss Score
9.28
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGAGTCCAGCAGCGGCGTCAGCCGTGACGACTACATTGGCCAGGTTGCCAAAGACATTGAGAACAAGATGCCCAAGATCTTTGACCTGGACCAGGTTCGGAAGCACCTGGGCTTGAGCATCACACCCACCTCGGTGGTACTGCTACAGGAGCTGGGGCGCTTCAACAAGCTTGTCATTCGCATGACCAGGTCTCTGGCTGAGCTCCAGAGG
Seq A exon
GCCTTGGCTGGGGAAGTCGGAATGAGCAATGAGTTAGATGATGTAGCCAGGTCTCTCTTCCTTGGGCACATCCCTCACATCTGGAGGAAGCTTGCCCCCGACACCCTGAAGACCCTTGGAAACTGGATGGTCTACTTCCTGAGGCGGTTCAGCCAGTACACACTGTGG
Seq C2 exon
GTTACTGAGGGCGAGCCCAGTGTGATGTGGCTCTCTGGGCTGCACATCCCTGAGTCCTACCTCACGGCCCTGGTACAGGCCACATGCCGGAGGAATGGCTGGCCGTTGGACCGGTCCACCTTGTTTACACAAGTGACCAAGTTCCAGGATGCCGATGAAGTAAACGAGCGTGCGGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'81-93,'81-88,92-93=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.8=100)
A:
PF0302810=Dynein_heavy=FE(7.7=100)
C2:
PF0302810=Dynein_heavy=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGACTACATTGGCCAGG
R:
AGGTAGGACTCAGGGATGTGC
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types