BtaEX6072276 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54256395-54260984:-
Coord C1 exon
chr17:54260850-54260984
Coord A exon
chr17:54260522-54260599
Coord C2 exon
chr17:54256395-54256475
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTATTTTATTTCTAGGAA
3' ss Score
10.38
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AAACACTTTTAAGTACTGGACCAGCCCCCAGGAATGTGAACGTGGAAGAACATTATATTTTCAGGTGGAATAATAATACAATCAGTGAAATAAACGTCAGAATTATCAGGGCAGAAATTAATGCCCAGCAGAAAG
Seq A exon
GAATCATGACACAGAGATTTACAGTGAAATTTTTAAGCTATAACAGTGGTAATAAACAGGAATGGTCTGGAAACCCAG
Seq C2 exon
GTTACCAACTTGGCAAGCCTGTTCGAGCTCTAAGCACCAACGGGACAAATAATGTCACAACTTTACACCTTTGGTATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271-'18-13,'18-12,19-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.111 C2=0.071
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(16.6=100)
A:
PF077736=DUF1619=FE(9.6=100)
C2:
PF077736=DUF1619=PD(2.2=21.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGTACTGGACCAGCCCCC
R:
CGTTGGTGCTTAGAGCTCGAA
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]