MmuEX6021015 @ mm9
Exon Skipping
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:125065160-125069117:+
Coord C1 exon
chr5:125065160-125065294
Coord A exon
chr5:125066478-125066555
Coord C2 exon
chr5:125069040-125069117
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTCTTTTATTTCTAGGAA
3' ss Score
10.37
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACACAGTTTTAAGTGTCGGATCGGCCCCCAGAAACGTGAATGTGGAAGAACATTATGTCTTCAGATGGCAAAATAATTCCATCAGCGGCCTAGACATCACAGTCATCAGGGCAGAAATCAGTGCCCAGCAGAGAG
Seq A exon
GAATGATGACCCAGAGATTCACAGTGAAGTTTTTAAGCCATCACAGTGGTGGTGAGAAGGAATTTTCTGGAAATCCAG
Seq C2 exon
GTTACCAGCTTGGCAAGCCGGTCCGAGCCCTGCATACCGCTGGGATGAACGTCAGCACACTGCACCTCTGGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.185 C2=0.018
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(16.5=100)
A:
PF077736=DUF1619=FE(9.6=100)
C2:
PF077736=DUF1619=PD(2.2=22.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAAGTGTCGGATCGGCCC
R:
GACGTTCATCCCAGCGGTATG
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: