HsaEX0064289 @ hg38
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr12:123694842-123696495:+
Coord C1 exon
chr12:123694842-123694976
Coord A exon
chr12:123695220-123695297
Coord C2 exon
chr12:123696415-123696495
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTATTTTGTTTTATTTCTAGGGA
3' ss Score
10.16
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAACTCCTTTAAATAACGGATCAACCCCTAGAATTGTGAATGTGGAAGAACATTATATTTTCAAATGGAATAATAATACCATCAGTGAAATAAATGTTAAAATTTTTAGGGCAGAGATTAATGCCCACCAGAAAG
Seq A exon
GGATAATGACACAGAGATTTGTAGTAAAATTTTTAAGCTATAATAGTGGTAATGAAGAAGAATTATCTGGAAATCCAG
Seq C2 exon
GTTACCAACTTGGCAAGCCTGTCCGAGCTCTAAATATCAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778_MULTIEX3-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(16.4=100)
A:
PF077736=DUF1619=FE(9.5=100)
C2:
PF077736=DUF1619=PD(2.2=21.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTTAAATAACGGATCAACCCC
R:
TTTAGAGCTCGGACAGGCTTG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development