HsaEX0064288 @ hg38
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr12:123692658-123695297:+
Coord C1 exon
chr12:123692658-123692723
Coord A exon
chr12:123694842-123694976
Coord C2 exon
chr12:123695220-123695297
Length
135 bp
Sequences
Splice sites
3' ss Seq
ACATATTCTTGTATTTGCAGAAA
3' ss Score
8.58
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GCATAGTTACACCAAAAGTGATCTATGAGGAAGCAACTGACCTAGACAAATTCATCACCAATACAG
Seq A exon
AAACTCCTTTAAATAACGGATCAACCCCTAGAATTGTGAATGTGGAAGAACATTATATTTTCAAATGGAATAATAATACCATCAGTGAAATAAATGTTAAAATTTTTAGGGCAGAGATTAATGCCCACCAGAAAG
Seq C2 exon
GGATAATGACACAGAGATTTGTAGTAAAATTTTTAAGCTATAATAGTGGTAATGAAGAAGAATTATCTGGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.087 C2=0.111
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(8.0=100)
A:
PF077736=DUF1619=FE(16.4=100)
C2:
PF077736=DUF1619=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAAGTGATCTATGAGGAAGCA
R:
TCCAGATAATTCTTCTTCATTACCAC
Band lengths:
127-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development