MmuEX0046776 @ mm9
Exon Skipping
Gene
ENSMUSG00000029386 | Tctn2
Description
tectonic family member 2 [Source:MGI Symbol;Acc:MGI:1915228]
Coordinates
chr5:125062653-125066555:+
Coord C1 exon
chr5:125062653-125062718
Coord A exon
chr5:125065160-125065294
Coord C2 exon
chr5:125066478-125066555
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCATATTCTCGTCTTTGCAGACA
3' ss Score
9.39
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCCGGTCACACCAACAGTAACCTATGAGGAAGCCATTGACCTGGACAAGTTCATCACCAGCCCGG
Seq A exon
ACACAGTTTTAAGTGTCGGATCGGCCCCCAGAAACGTGAATGTGGAAGAACATTATGTCTTCAGATGGCAAAATAATTCCATCAGCGGCCTAGACATCACAGTCATCAGGGCAGAAATCAGTGCCCAGCAGAGAG
Seq C2 exon
GAATGATGACCCAGAGATTCACAGTGAAGTTTTTAAGCCATCACAGTGGTGGTGAGAAGGAATTTTCTGGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029386-'12-9,'12-8,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.022 C2=0.185
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(8.1=100)
A:
PF077736=DUF1619=FE(16.5=100)
C2:
PF077736=DUF1619=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGGTCACACCAACAGTAA
R:
TTCCAGAAAATTCCTTCTCACCACC
Band lengths:
138-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: