GgaEX1057812 @ galGal3
Exon Skipping
Gene
ENSGALG00000023683 | TCTN2
Description
NA
Coordinates
chr15:4975576-4976775:-
Coord C1 exon
chr15:4976710-4976775
Coord A exon
chr15:4975928-4976056
Coord C2 exon
chr15:4975576-4975653
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTCTTCTGCAGAAG
3' ss Score
12.09
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
ACTTCATCCAACAAAATGTGATCTACAGAACCGTCACTGATGTGGGCAAATTCATCACTAAAAGTG
Seq A exon
AAGGCCTTCCTACTGCAGGGCTTCCATGTCAAAAGGTAACCTTTGCAGAGCATTATGCATTCATTTGGGAAGATGATAACATAGAGGGAGTGAATGTCACAGTCTTCCTTGGAAGTTTATGTGATGGAG
Seq C2 exon
AAACACTGACACAGAGATTCACAGCTGAATTTGTAAGCTTAAGGAGTGACAGTGCCACAGAAGTGCCTAAGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683-'8-13,'8-11,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(8.2=100)
A:
PF077736=DUF1619=FE(16.0=100)
C2:
PF077736=DUF1619=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACAAAATGTGATCTACAGAACC
R:
CTGGATTCTTAGGCACTTCTGTGG
Band lengths:
138-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]