RnoEX0013283 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37411453-37414468:-
Coord C1 exon
chr12:37414403-37414468
Coord A exon
chr12:37412698-37412832
Coord C2 exon
chr12:37411453-37411530
Length
135 bp
Sequences
Splice sites
3' ss Seq
CACACATTCTTGTCTTTCAGACA
3' ss Score
9.87
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCTGGTCACACCAACCGTAACCTATGAGGAAGCCACTGACCTGGACAAGCTCATCACTAGTCCAG
Seq A exon
ACACAATTTTAAGTGCCGGATCGGCTCCCAGAAATGTGACTGTGGAAGAACATTATGTTTTCAGATGGCAAAATAATTCTATCAGCAGCCTAGACATCACAATCATCAGGGCAGAAATCAACGCCCACCAGAGAG
Seq C2 exon
GAACAATGACCCAGAGATTTACAGTGAAGTTTTTAAGCCCTAACAGTGGTGGTGAGAAGGAATTTTCTGGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.043 C2=0.237
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(8.1=100)
A:
PF077736=DUF1619=FE(16.5=100)
C2:
PF077736=DUF1619=PU(77.4=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACACCAACCGTAACCTA
R:
GGATTTCCAGAAAATTCCTTCTCACC
Band lengths:
138-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]