BtaEX6072275 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54260522-54262613:-
Coord C1 exon
chr17:54262548-54262613
Coord A exon
chr17:54260850-54260984
Coord C2 exon
chr17:54260522-54260599
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAGTACTCTCTTATTTCCAGAAA
3' ss Score
5.88
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GCATAGTTACACCGAAAGTAATCTACGAGGAAGCAACTGACTTAGACAGATTCATCACCAATACAG
Seq A exon
AAACACTTTTAAGTACTGGACCAGCCCCCAGGAATGTGAACGTGGAAGAACATTATATTTTCAGGTGGAATAATAATACAATCAGTGAAATAAACGTCAGAATTATCAGGGCAGAAATTAATGCCCAGCAGAAAG
Seq C2 exon
GAATCATGACACAGAGATTTACAGTGAAATTTTTAAGCTATAACAGTGGTAATAAACAGGAATGGTCTGGAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271-'16-12,'16-11,18-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.111
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(8.1=100)
A:
PF077736=DUF1619=FE(16.6=100)
C2:
PF077736=DUF1619=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTACACCGAAAGTAATCTACGAGG
R:
TGGGTTTCCAGACCATTCCTG
Band lengths:
139-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]