RnoEX6064242 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37409499-37412832:-
Coord C1 exon
chr12:37412698-37412832
Coord A exon
chr12:37411453-37411530
Coord C2 exon
chr12:37409499-37409576
Length
78 bp
Sequences
Splice sites
3' ss Seq
CGGTTTCTTTTCTTTTCTAGGAA
3' ss Score
12.76
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACACAATTTTAAGTGCCGGATCGGCTCCCAGAAATGTGACTGTGGAAGAACATTATGTTTTCAGATGGCAAAATAATTCTATCAGCAGCCTAGACATCACAATCATCAGGGCAGAAATCAACGCCCACCAGAGAG
Seq A exon
GAACAATGACCCAGAGATTTACAGTGAAGTTTTTAAGCCCTAACAGTGGTGGTGAGAAGGAATTTTCTGGAAATCCAG
Seq C2 exon
GTTACCAGCTTGGCAAGCCGGTCCGAGCTCTGCATACCGATGGCATGAATGTCACCACGTTGCACCTCTGGCAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'12-13,'12-11,13-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.237 C2=0.037
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(16.5=100)
A:
PF077736=DUF1619=FE(9.6=100)
C2:
PF077736=DUF1619=PD(19.4=22.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGGCTCCCAGAAATGTG
R:
GCAACGTGGTGACATTCATGC
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]