BtaEX6072961 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63401818-63404470:-
Coord C1 exon
chr17:63404333-63404470
Coord A exon
chr17:63403437-63403581
Coord C2 exon
chr17:63401818-63401990
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCTTCTTTGCTCCAGGCT
3' ss Score
9.54
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GACGTGAAGTACCTGGCCATAAGCGGCTTTCTCTTCCTGCGATTCTTCGCACCTGCCATCCTCTCTCCAAAGCTGTTTGACCTCCGGGACCAGCACGCGGATCCCCAGACCAGCCGCTCACTGCTGCTGCTTGCCAAG
Seq A exon
GCTGTGCAGAGCATTGGAAATCTGGGCCAGCAGCTGGGCCAGGGCAAGGAGCTGTGGATGGCCCCCCTACACCCCTTTCTGCTGCAGAGTATTTCCAGGGTGAGAGACTTCCTGGACCAGCTGGTGGAGGTGGATGGGAAGGAGG
Seq C2 exon
AGGCTGGGGGCCCAGCCAGGGCCCTGGTCCCGCCCTCAATGACTGTCCGAGAAGGCTACCTACTCAAGCGCAAGGAGGAGCCTGCCGGCCTGGCCACACGCTTTGCCTTCAAGAAGCGCTACTTCCGGCTCAGCGGGGAGATGCTGTCCTACTCCAAGAGTCCTGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739-'18-20,'18-18,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.7=100)
A:
PF0061614=RasGAP=PD(3.2=12.2)
C2:
PF0016924=PH=PU(40.2=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTACCTGGCCATAAGCGG
R:
GCTTCTTGAAGGCAAAGCGTG
Band lengths:
250-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]