MmuEX6020426 @ mm10
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120670276-120674739:+
Coord C1 exon
chr5:120670276-120670413
Coord A exon
chr5:120671541-120671685
Coord C2 exon
chr5:120674567-120674739
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTCTTTGCTCCAGGCT
3' ss Score
9.64
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GATGTGAAGTACCTGGCCATCAGTGGCTTCCTCTTTCTGCGGTTCTTTGCGCCTGCCATCCTCACACCGAAACTGTTTGACCTCAGAGACCAGCACGCAGACCCCCAGACCAGCCGTTCCCTGCTGCTGCTCGCCAAG
Seq A exon
GCTGTGCAGAGCATTGGGAACCTGGGCCAGCAGCTGGGCCAGGGCAAGGAGCAGTGGCTAGCCCCGCTCCATCCCTTCCTGCTGCAGAGCATCTCACGTGTGAGGGACTTCCTGGACCAGCTGGTGGATGTGGACGAGGATGAGG
Seq C2 exon
AGGCCGGGGGTCCAGCCTGCGCCCTGGTCCAACCCTCAACCATTGTTCGAGAAGGCTTCCTGCTGAAGCGCAAGGAGGAGCCTGGAGGCCTGGCCACGCGCTTTGCCTTCAAGAAGCGCTACTTCCGGCTGAGTGGGCGGGACCTCTCCTACTCCAAGACTCCGGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-'37-41,'37-34,38-41=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.7=100)
A:
PF0061614=RasGAP=PD(3.2=12.2)
C2:
PF0016924=PH=PU(40.2=74.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCCTCACACCGAAACTG
R:
CTTGGAGTAGGAGAGGTCCCG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types