GgaEX6014484 @ galGal4
Exon Skipping
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11193859-11195402:-
Coord C1 exon
chr15:11195265-11195402
Coord A exon
chr15:11194194-11194332
Coord C2 exon
chr15:11193859-11194034
Length
139 bp
Sequences
Splice sites
3' ss Seq
AATCCCACTCCCACGAGCAGGCA
3' ss Score
2.67
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GAGGTGCAGTACTTCGCCATCAGTGGGTTCCTCTTCCTCCGCTTCTTTGCCCCTGCCGTCCTCACCCCGAAGCTCTTTGGTCTGCGGGAGCAGCATGCTGAGCCCCGCACTGGGCGCACACTCTTGCTGCTCGCCAAG
Seq A exon
GCACTGCAGAGCATCGGCAACTTGGGGCTGCAGCCGGGCAAGGAGCCCTGGATGGCCCCGTTGCACACCGTCCTGCTGCCCAGCATCACTCGTGTCAGAGCCTTCCTAGACAGCCTCATCGAGGTGGACAGCACCCAGG
Seq C2 exon
CAGGTGAGGGGATGGTGTCAGCGGCACCTTTCAGTCCCTCGGCCACAATCAAGGAGGGTTTCCTGCACGCACGGGAGGCCGAGGAGCCCTCCCTGCTGCCCCGCTTCGCCTTCAAGAAGCGCTACTTCTGGCTCAGCGCCCAGGCTCTGTCCTACTCCAAGTCCCCCGAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150-'21-23,'21-21,22-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.7=100)
A:
PF0061614=RasGAP=PD(3.2=12.8)
C2:
PF0016924=PH=PU(40.2=72.9)
Main Inclusion Isoform:
ENSGALT00000013239fB11311
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGGTTCCTCTTCCTCC
R:
TAGCGCTTCTTGAAGGCGAAG
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]