HsaEX6069272 @ hg38
Exon Skipping
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr12:113105714-113108225:-
Coord C1 exon
chr12:113108085-113108225
Coord A exon
chr12:113107097-113107241
Coord C2 exon
chr12:113105714-113105886
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCTCGCTTCTTTGCTCCAGGCT
3' ss Score
8.63
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CAGGATGTGAAGTACCTGGCCATCAGTGGATTTCTCTTCTTGCGATTCTTCGCACCTGCCATCCTTACCCCAAAGCTGTTTGACCTTCGGGACCAACACGCGGACCCCCAGACTAGCCGCTCACTGCTGTTGCTTGCCAAG
Seq A exon
GCTGTGCAGAGCATTGGAAACCTGGGCCAGCAGCTGGGCCAAGGCAAGGAACTGTGGATGGCCCCCCTGCACCCCTTCCTGCTGCAGTGTGTCTCACGTGTGAGAGACTTCCTGGACCGGCTGGTGGATGTGGATGGGGATGAAG
Seq C2 exon
AAGCTGGTGTCCCAGCCAGGGCCCTGTTCCCGCCCTCGGCCATTGTTCGAGAAGGCTATCTGCTGAAGCGCAAGGAGGAGCCTGCCGGCCTGGCCACGCGCTTTGCCTTCAAGAAGCGCTACGTCTGGCTCAGCGGGGAGACCCTCTCCTTCTCCAAGAGTCCTGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344-'29-32,'29-31,31-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.7=100)
A:
PF0061614=RasGAP=PD(3.2=12.2)
C2:
PF0016924=PH=PU(40.2=75.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCCTTACCCCAAAGCTG
R:
GCCACTCAGGACTCTTGGAGA
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains