BtaEX6073576 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68251170-68256152:+
Coord C1 exon
chr17:68251170-68251303
Coord A exon
chr17:68253539-68253731
Coord C2 exon
chr17:68255967-68256152
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCTGCCCGTCCCCAGGTG
3' ss Score
11.66
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTCTCTGCAGTGTGAGCTTCTCTGACCCTGAAGGGTACATCGACTCCAGTGATTACCCGCCGTTGCCCCTCAACAACTTCCTGGAGTGCACGTACAATGCGACGGTCTACACTGGCTATGGGGTGGAGCTCCAG
Seq A exon
GTGAAGAGCGTGAACCTGTCCGAGGGGGAGCTGCTTTCCATCCGAGGGGTGGACGGCCCCTCTCTGACCGTCCTGGCCAACCACACGCTCCTGGTCGAGGGCCAGGTCATCCGCAGCCCCACCAACACCATCTCCGTGTACTTCCGCACCTTCCAGGACGACGGCCTCGGGACCTTCCAGCTGCACTACCAGG
Seq C2 exon
CCTTCATGCTGAGCTGCAGCTTCCCCCGCCGGCCTGACTTCGGGGACGTCACGGTGATGGACCTGCACTCGGGCGGGGAGGCCCACTTCCACTGCCACCTGGGCTATGAGCTCCAGGGCGCCAAGACACTGACGTGCATCAATGCCTCCAAGCCCCACTGGAGCAGCCGGGAGCCCATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(39.6=93.3)
A:
PF0043115=CUB=PD(58.5=95.4)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTGAGCTTCTCTGACC
R:
TGGAGCTCATAGCCCAGGTG
Band lengths:
243-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]