HsaEX6026181 @ hg19
Exon Skipping
Gene
ENSG00000100095 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:10763]
Coordinates
chr22:26690258-26695135:+
Coord C1 exon
chr22:26690258-26690391
Coord A exon
chr22:26692854-26693046
Coord C2 exon
chr22:26694950-26695135
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTGCCTGTTCCCAGGTG
3' ss Score
11.34
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
CTCTCTGCAGTGTGAGCTTCTCCAATCCTGAGGGGTACATTGACTCCAGCGACTACCCACTGCTGCCCCTCAACAACTTTCTGGAGTGCACATACAACGTGACAGTCTACACTGGCTATGGGGTGGAGCTCCAG
Seq A exon
GTGAAGAGTGTGAACCTGTCCGATGGGGAACTGCTCTCCATCCGCGGGGTGGACGGCCCTACCCTGACCGTCCTGGCCAACCAGACACTCCTGGTGGAGGGGCAGGTAATCCGAAGCCCCACCAACACCATCTCCGTCTACTTCCGGACCTTCCAGGACGACGGCCTTGGGACCTTCCAGCTTCACTACCAGG
Seq C2 exon
CCTTCATGCTGAGCTGCAACTTTCCCCGCCGGCCTGACTCTGGGGATGTCACGGTGATGGACCTGCACTCAGGTGGGGTGGCCCACTTTCACTGCCACCTGGGCTATGAGCTCCAGGGCGCTAAGATGCTGACATGCATCAATGCCTCCAAGCCGCACTGGAGCAGCCAGGAGCCCATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100095-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PD(68.5=82.2),PF0043115=CUB=PU(39.6=93.3)
A:
PF0043115=CUB=PD(58.5=95.4)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCTCCAATCCTGAGGGG
R:
TGCATGTCAGCATCTTAGCGC
Band lengths:
258-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)