GgaEX6014014 @ galGal4
Exon Skipping
Gene
ENSGALG00000005577 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr15:7124629-7127447:+
Coord C1 exon
chr15:7124629-7124762
Coord A exon
chr15:7126687-7126879
Coord C2 exon
chr15:7127262-7127447
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACGGCTCTCTTCCCACCCAGGTG
3' ss Score
10.01
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
TGCGCTGCAGTGTGAGCTTCTACGACCCCGAGGGCTACATTGACTCCACGGATTACCCCCCGCTGCCCCGGCACAGCTTCTTGGAGTGCACCTACAACGTCACTGTTTACACGGGCTATGGCGTGGAGCTGCAG
Seq A exon
GTGAAGAGCGTCAACCTGTCAGACGGGGAGGTGCTTTCCATCCGTGGCGTGGATGACGACACGCTGGTGGTGCTGGCCAACCAGACACTGCTGGTGGAAGGCCAGGTCATCCGCAGCCCCACCAACACCATCTCCGTCTACTTCCGTACCTTCCAGGACGAGGCGGTGGGGACCTTCCAGCTGCACTACCAGG
Seq C2 exon
TGTTTATGCTGAGCTGCAGCTTCCCACGAAGACCCGACTTTGGAGACGTCACCGTGATGGACCTGCACTCGGGTGGCATTGCTCACTTCCACTGCCATCTGGGCTACGAGCTGCAGGGCCCCCACATGCTCACCTGCATCAACGCGTCCCGGCCCCACTGGAGCAGCCCCGAGCCCATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(39.6=93.3)
A:
PF0043115=CUB=PD(58.5=95.4)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTGAGCTTCTACGACC
R:
CTGCAGCTCGTAGCCCAGAT
Band lengths:
244-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]