DreEX6089847 @ danRer10
Exon Skipping
Gene
ENSDARG00000100594 | sez6l
Description
seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
Coordinates
chr10:44794987-44803731:+
Coord C1 exon
chr10:44794987-44795270
Coord A exon
chr10:44801366-44802192
Coord C2 exon
chr10:44803560-44803731
Length
827 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTGCTTTATTGCAGGTG
3' ss Score
11.39
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
CAGCAAGAAGATTTGGTAAACTCCAAGAATGAGGGACTTAAACCACAAGTTGGTGGGTTTAGTTGGTGTTGGTGGAGCAGATGTTAATTAAATGTAATGTAGTGTCTGATATGTTGTTGTGTAATATCTGCTATTTTCCTCCAGCTCAATCAAACTGCAGGGTGAATTTCAGCGAGCCGGAGGGTTACATCGACTCCTCAGACGAGCCGCCACTTCCAGACGGAGCACTCCTGCAGTGCATCTACACCATCAGCGTTTACACTGGATACGGCGTCGAGCTGCAG
Seq A exon
GTGAAAAGTGTGAACCTGTCAGAGGGCGAGCAGCTGTCAATCAGAGGAGTAGATGAAGGCGGAGCCCTGCTCGTTCTGGCCAATCAGACACTTCTGGTGGAGGGTCAGGTGATCCGCAGTCCGACCAATACGCTGTCGGTGTTTTACCGCTCGTCTCCAGAGGGAGGAGTCGGCCTGTTCCAGCTGCACTATCAGAGTCAGTCTCAAAACAACCCATTAAGCACTAAACAGCAGCTCTGGGCCTTATAATCACTCATCACACACAACTGGGGTGTTTATATAATATTATGCTAATGAATTCCACAGGTGCGTGCGTGGAAATGATAAAAGCGCTCCTCGTCTGGAAGCCTCAGTGTTGTTGCGGAGAGTTTGCCTCTAAACTTTTAATTGAAAAAGTCTCTGCTTGGTTAATTTGCTTTGCTATCAAACTAGATAGCTTCTGCCGTGTCCATTAACAGGCTAATGTAGTGAAGTTTTACTCCAGGGCTCATTTCACAGAGTTTTTCTCATGCGCAGTCGAATTAGCATTCATTTCCCTCATAAATGATTAAAGGATAAGTCCACTCTGCAGAGATGTCTTCATGTACTTAGATGGTGTAAATGGAGATGTTTTAAAGGATGACTGAGTGTTTCTTCTCCAGTTTTTCGGCTGAGTTGTGCTCTACCTCGACGGCCTCATTTTGGTGAGGTGTCAGTCAAAGATCTGCATCCTGGAGGAACGGCTCATTTCCAGTGTCACATGGGATATCACCTGCAGGGGGACGCCACTCTCACCTGCCTGAACGCCTCGCTGCCCGTCTGGAGCCAGCATGAGCCCAGCTGCAGAG
Seq C2 exon
CTCTGTGTGGCGGTGTTGTTAAGAACGCAACAGTGGGACGAGTGTTGTCCCCCTCACCCCATTCAGGCCCCAACAGCACTCTGGACCGCAGCTGCTCATGGTCTCTGGAGGCTCCAAGCGGCCAGCGGCTGCACCTACACCTGGAGAGAATGGTGTTGGGCACCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100594-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.198
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0043115=CUB=PU(49.5=94.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGTTTAGTTGGTGTTGGT
R:
CTCCAGAGACCATGAGCAGCT
Band lengths:
343-1170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]