BtaEX6074108 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73730812-73739476:-
Coord C1 exon
chr17:73739310-73739476
Coord A exon
chr17:73731426-73731530
Coord C2 exon
chr17:73730812-73730997
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTATCCTTTTGTCCTGCAGAGT
3' ss Score
11.29
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATGCGTTGTTCGGGACGCCACCGGGGTTCGGCTGTGCCTCGGATCGGGCGGAGGAGCCGCGCCGGCCCCAGGACGGGCTGCCCTACATCGATGACTCGCCCGCCTCCTCACCCCACCTCAGCAGCAAGGCCCGGGGTGGCAGGGACGCGGCGGAGCCCAGCAGAGCG
Seq A exon
AGTGAGCTGGACTTGGAAAAGGGCTCAGAGATGAGAAAATGGGTCCTGTCTGGCATCCTGGCTAGCGAGGAGACTTACCTGAGCCATCTGGAGGCGCTGCTGCTG
Seq C2 exon
CCCATGAAGCCTCTGAAGGCGGCTGCCACCACCTCTCAGCCCGTGCTGACGAGCCAGCAGATCGAGACCATCTTCTTCAAAGTGCCTGAGCTCTACGAGATCCACAAGGACTTCTACGACGGGCTCCTGCCCCGCGTGCAGCAGTGGAGCCGCCAGCAGCGCGTGGGCGACCTCTTCCAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.114 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(10.6=57.1)
C2:
PF0062115=RhoGEF=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCACCCCACCTCAG
R:
CAGCTTCTGGAAGAGGTCGC
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]