DreEX0016849 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17138280-17142691:+
Coord C1 exon
chr21:17138280-17138380
Coord A exon
chr21:17141122-17141226
Coord C2 exon
chr21:17142506-17142691
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCACTGTTCACACAGGCG
3' ss Score
7.75
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
TGAATAAGTACTAAAGGCAAGTTTCAGGTCTGTAAAGTCTAAGAAGGGAAGTGTTAGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
GCGGAGTTGGACCTGGAGAAGGGATTGGAGATGAGGAAAAGGGTGTTGTCTGGAATTCTGGCCAGTGAAGAGACCTACCTCAGCCATTTGGAGGCGCTGTTACTG
Seq C2 exon
CCTATGAAGCCCCTGAAAGCAGCAGCCACCACCTCCCAGCCTGTCCTCACTGTTCAACAGATCGAAACCATCTTCTTTAAAGTGCCTGAGCTCTACGAGATCCACAAAGAATTTTACGATAGCCTTTTGCCCAGAGTGCAGCAGTGGAGTCACCACCAGCGTGTGGGAGACCTTTTCCAAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'4-3,'4-2,5-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.086 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0062115=RhoGEF=PU(10.6=57.1)
C2:
PF0062115=RhoGEF=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCAAGTTTCAGGTCTGT
R:
GTGACTCCACTGCTGCACTC
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]