GgaEX1010746 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8615914-8627058:-
Coord C1 exon
chr15:8626874-8627058
Coord A exon
chr15:8616606-8616710
Coord C2 exon
chr15:8615914-8616099
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTTAACAACTCCTTTCTAGAGT
3' ss Score
4.93
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ATGCCTCATTCAGTGGCACACCACCTAGCTATGCGTATGATGCAGACCGTGCTGAAGAACAGAGGCGACATCATGATATGATGCCCTATATCGATGACTCGCCATCATCTTCCCCCCATCTCAGTTCCAAGAGTCGAGGCAGCAGAGACACCCTATCTTCAGGGTCTCTGGAATCTACAAAATCA
Seq A exon
AGTGAGCCAGATCTGGAGAAAGGCCTGGAGATGAGAAAATGGGTCCTGTCAGGAATCCTGGCCAGTGAGGAAACCTACCTGAGCCATCTGGAGGCTCTGCTGCTG
Seq C2 exon
CCTATGAAGCCTTTGAAAGCAGCTGCCACCACCTCTCAGCCTGTGCTGACTAGTCAGCAGATTGAGACAATATTCTTCAAAGTGCCTGAGCTGTACGAGATCCACAAAGAATTCTATGATGGACTCTTTCCCCGAGTGCAGCAGTGGAGTCACCAGCAACGTGTCGGAGACCTCTTCCAAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'14-8,'14-7,15-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.114 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(10.6=57.1)
C2:
PF0062115=RhoGEF=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGTATGATGCAGACCGTG
R:
ATCTCGTACAGCTCAGGCACT
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]