RnoEX6062423 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14473433-14480993:-
Coord C1 exon
chr20:14480821-14480993
Coord A exon
chr20:14474939-14475043
Coord C2 exon
chr20:14473433-14473618
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTTCTGTCCTGCAGAGT
3' ss Score
11.1
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATTCCTCGTTTGGAACACCACCTGGATATGGCTGTGCTGCAGACCAGGCTGAGGAACAGCGCCGGCACCAGGACGGGCTGCCCTACATCGATGATTCACCTTCCTCCTCGCCACACCTCAGCAGCAAAGGCAGGGGCAGCCCAGCCTCAGGCGCCCTGGAGCCCACCAAAGCG
Seq A exon
AGTGAGCTGGATTTGGAAAAGGGCTTGGAGATGAGGAAGTGGGTTTTGTCCGGAATCCTGGCCAGCGAGGAGACATACCTGAGCCATCTGGAGGCCCTGCTGCTG
Seq C2 exon
CCCATGAAGCCTCTGAAAGCCGCTGCCACCACGTCTCAGCCTGTGCTGACCAGCCAGCAGATTGAGACCATTTTCTTCAAAGTGCCTGAGCTCTACGAGATCCACAAGGAGTTCTATGACGGGCTCTTTCCCCGCGTACAACAGTGGAGCCACCAGCAGCGCGTGGGTGACCTCTTCCAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.086 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(10.6=57.1)
C2:
PF0062115=RhoGEF=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCGTTTGGAACACCACC
R:
ATGGTCTCAATCTGCTGGCTG
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]